cellarr

• cellarr package
  • Subpackages
    • cellarr.build package
      • Submodules
      • cellarr.build.build_cellarr_steps module
      • cellarr.build.build_cellarrdataset module
      • cellarr.build.build_options module
      • cellarr.build.buildutils_tiledb_array module
      • cellarr.build.buildutils_tiledb_frame module
      • Module contents
    • cellarr.ml package
      • Submodules
      • cellarr.ml.autoencoder module
      • cellarr.ml.dataloader module
      • Module contents
    • cellarr.slurm package
      • Submodules
      • cellarr.slurm.final_assembly module
      • cellarr.slurm.finalize_matrix module
      • cellarr.slurm.process_cell_metadata module
      • cellarr.slurm.process_gene_annotation module
      • cellarr.slurm.process_matrix module
      • cellarr.slurm.process_matrix_all module
      • cellarr.slurm.process_sample_metadata module
      • Module contents
    • cellarr.utils package
      • Submodules
      • cellarr.utils.queryutils_tiledb_frame module
      • cellarr.utils.utils_anndata module
      • Module contents
  • Submodules
  • cellarr.CellArrDataset module
    • CellArrCellIterator
      • CellArrCellIterator.__init__()
      • CellArrCellIterator.__iter__()
      • CellArrCellIterator.__next__()
    • CellArrDataset
      • CellArrDataset.__del__()
      • CellArrDataset.__enter__()
      • CellArrDataset.__exit__()
      • CellArrDataset.__getitem__()
      • CellArrDataset.__init__()
      • CellArrDataset.__len__()
      • CellArrDataset.__repr__()
      • CellArrDataset.get_cell_metadata_column()
      • CellArrDataset.get_cell_metadata_columns()
      • CellArrDataset.get_cell_subset()
      • CellArrDataset.get_cells_for_sample()
      • CellArrDataset.get_gene_annotation_column()
      • CellArrDataset.get_gene_annotation_columns()
      • CellArrDataset.get_gene_annotation_index()
      • CellArrDataset.get_gene_subset()
      • CellArrDataset.get_matrix_subset()
      • CellArrDataset.get_number_of_cells()
      • CellArrDataset.get_number_of_features()
      • CellArrDataset.get_number_of_samples()
      • CellArrDataset.get_sample_metadata_column()
      • CellArrDataset.get_sample_metadata_columns()
      • CellArrDataset.get_sample_metadata_index()
      • CellArrDataset.get_sample_subset()
      • CellArrDataset.get_slice()
      • CellArrDataset.initialize_from_paths()
      • CellArrDataset.itercells()
      • CellArrDataset.itersamples()
      • CellArrDataset.shape
    • CellArrSampleIterator
      • CellArrSampleIterator.__init__()
      • CellArrSampleIterator.__iter__()
      • CellArrSampleIterator.__next__()
  • cellarr.CellArrDatasetSlice module
    • CellArrDatasetSlice
      • CellArrDatasetSlice.__annotations__
      • CellArrDatasetSlice.__dataclass_fields__
      • CellArrDatasetSlice.__dataclass_params__
      • CellArrDatasetSlice.__eq__()
      • CellArrDatasetSlice.__hash__
      • CellArrDatasetSlice.__init__()
      • CellArrDatasetSlice.__len__()
      • CellArrDatasetSlice.__match_args__
      • CellArrDatasetSlice.__repr__()
      • CellArrDatasetSlice.cell_metadata
      • CellArrDatasetSlice.gene_annotation
      • CellArrDatasetSlice.get_assays()
      • CellArrDatasetSlice.matrix
      • CellArrDatasetSlice.shape
      • CellArrDatasetSlice.to_anndata()
      • CellArrDatasetSlice.to_summarizedexperiment()
  • Module contents