cellarr.slurm package¶

Submodules¶

cellarr.slurm.finalize_matrix.finalize_matrix(args_json)[source]¶: Finalize the matrix after all array jobs complete.

cellarr.slurm.process_cell_metadata.process_cell_metadata(args_json)[source]¶

Process and create cell metadata store.

Creates cell metadata including: - Sample mapping - Cell indices within samples - Original cell annotations from input files

cellarr.slurm.process_gene_annotation.process_gene_annotation(args_json)[source]¶

cellarr.slurm.process_matrix.process_matrix_file(args_json)[source]¶: Process a single file for matrix creation.

cellarr.slurm.process_sample_metadata.process_sample_metadata(args_json)[source]¶

Process and create sample metadata store.

Creates sample metadata including: - Basic sample information - Cell counts per sample - Original gene sets - Sample index information