cellarr_array package

Subpackages

• cellarr_array.core package
  • Submodules
  • cellarr_array.core.base module
    • CellArray
      • CellArray.__abstractmethods__
      • CellArray.__getitem__()
      • CellArray.__init__()
      • CellArray.attr_names
      • CellArray.consolidate()
      • CellArray.dim_names
      • CellArray.mode
      • CellArray.ndim
      • CellArray.nonempty_domain
      • CellArray.open_array()
      • CellArray.shape
      • CellArray.vacuum()
      • CellArray.write_batch()
  • cellarr_array.core.dense module
    • DenseCellArray
      • DenseCellArray.__abstractmethods__
      • DenseCellArray.__annotations__
      • DenseCellArray.write_batch()
  • cellarr_array.core.helpers module
    • SliceHelper
      • SliceHelper.is_contiguous_indices()
      • SliceHelper.normalize_index()
    • create_cellarray()
    • create_group()
  • cellarr_array.core.sparse module
    • SparseCellArray
      • SparseCellArray.__abstractmethods__
      • SparseCellArray.__annotations__
      • SparseCellArray.__init__()
      • SparseCellArray.write_batch()
  • Module contents
• cellarr_array.dataloaders package
  • Submodules
  • cellarr_array.dataloaders.denseloader module
    • DenseArrayDataset
      • DenseArrayDataset.__getitem__()
      • DenseArrayDataset.__init__()
      • DenseArrayDataset.__len__()
      • DenseArrayDataset.__parameters__
    • construct_dense_array_dataloader()
  • cellarr_array.dataloaders.iterabledataloader module
    • CellArrayIterableDataset
      • CellArrayIterableDataset.__abstractmethods__
      • CellArrayIterableDataset.__annotations__
      • CellArrayIterableDataset.__init__()
      • CellArrayIterableDataset.__iter__()
      • CellArrayIterableDataset.__parameters__
    • construct_iterable_dataloader()
    • dense_batch_collate_fn()
    • sparse_batch_collate_fn()
  • cellarr_array.dataloaders.sparseloader module
    • SparseArrayDataset
      • SparseArrayDataset.__annotations__
      • SparseArrayDataset.__getitem__()
      • SparseArrayDataset.__init__()
      • SparseArrayDataset.__len__()
      • SparseArrayDataset.__parameters__
    • construct_sparse_array_dataloader()
    • sparse_coo_collate_fn()
  • cellarr_array.dataloaders.utils module
    • seed_worker()
  • Module contents
• cellarr_array.utils package
  • Submodules
  • cellarr_array.utils.config module
    • CellArrConfig
      • CellArrConfig.__annotations__
      • CellArrConfig.__dataclass_fields__
      • CellArrConfig.__dataclass_params__
      • CellArrConfig.__eq__()
      • CellArrConfig.__hash__
      • CellArrConfig.__init__()
      • CellArrConfig.__match_args__
      • CellArrConfig.__post_init__()
      • CellArrConfig.__repr__()
      • CellArrConfig.attrs_filters
      • CellArrConfig.cell_order
      • CellArrConfig.coords_filters
      • CellArrConfig.create_filter()
      • CellArrConfig.ctx_config
      • CellArrConfig.offsets_filters
      • CellArrConfig.tile_capacity
      • CellArrConfig.tile_order
    • ConsolidationConfig
      • ConsolidationConfig.__annotations__
      • ConsolidationConfig.__dataclass_fields__
      • ConsolidationConfig.__dataclass_params__
      • ConsolidationConfig.__eq__()
      • ConsolidationConfig.__hash__
      • ConsolidationConfig.__init__()
      • ConsolidationConfig.__match_args__
      • ConsolidationConfig.__repr__()
      • ConsolidationConfig.buffer_size
      • ConsolidationConfig.num_threads
      • ConsolidationConfig.step_max_frags
      • ConsolidationConfig.step_min_frags
      • ConsolidationConfig.steps
      • ConsolidationConfig.total_budget
      • ConsolidationConfig.vacuum_after
  • cellarr_array.utils.mock module
    • generate_tiledb_dense_array()
    • generate_tiledb_sparse_array()
  • Module contents

Module contents